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dc.contributor.authorde Molina, Claudia
dc.contributor.authorSerrano, Estefania
dc.contributor.authorGarcia-Blas, Javier
dc.contributor.authorCarretero, Jesus
dc.contributor.authorDesco, Manuel 
dc.contributor.authorAbella, Monica 
dc.date.accessioned2018-11-22T08:10:51Z
dc.date.available2018-11-22T08:10:51Z
dc.date.issued2018
dc.identifierISI:000432292000001
dc.identifier.citationBMC Bioinformatics. 2018; 19(1):171
dc.identifier.issn1471-2105
dc.identifier.urihttp://hdl.handle.net/20.500.12105/6670
dc.description.abstractBackground: Standard cone-beam computed tomography (CBCT) involves the acquisition of at least 360 projections rotating through 360 degrees. Nevertheless, there are cases in which only a few projections can be taken in a limited angular span, such as during surgery, where rotation of the source-detector pair is limited to less than 180 degrees. Reconstruction of limited data with the conventional method proposed by Feldkamp, Davis and Kress (FDK) results in severe artifacts. Iterative methods may compensate for the lack of data by including additional prior information, although they imply a high computational burden and memory consumption. Results: We present an accelerated implementation of an iterative method for CBCT following the Split Bregman formulation, which reduces computational time through GPU-accelerated kernels. The implementation enables the reconstruction of large volumes (> 1024 3 pixels) using partitioning strategies in forward- and back-projection operations. We evaluated the algorithm on small-animal data for different scenarios with different numbers of projections, angular span, and projection size. Reconstruction time varied linearly with the number of projections and quadratically with projection size but remained almost unchanged with angular span. Forward- and back-projection operations represent 60\% of the total computational burden. Conclusion: Efficient implementation using parallel processing and large-memory management strategies together with GPU kernels enables the use of advanced reconstruction approaches which are needed in limited-data scenarios. Our GPU implementation showed a significant time reduction (up to 48x) compared to a CPU-only implementation, resulting in a total reconstruction time from several hours to few minutes.
dc.description.sponsorshipThis work has been supported by TEC2013-47270-R, RTC-2014-3028-1, TIN2016-79637-P (Spanish Ministerio de Economia y Competitividad), DPI2016-79075-R (Spanish Ministerio de Economia, Industria y Competitividad), CIBER CB07/09/0031 (Spanish Ministerio de Sanidad y Consumo), RePhrase 644235 (European Commission) and grant FPU14/03875 (Spanish Ministerio de Educacion, Cultura y Deporte).
dc.language.isoeng
dc.publisherBioMed Central (BMC) 
dc.type.hasVersionVoR
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.subjectGPU
dc.subjectMemory management
dc.subjectParallel processing
dc.subjectIterative reconstruction
dc.subjectSplit Bregman
dc.subjectLimited-data tomography
dc.subjectCBCT
dc.subjectCONE-BEAM CT
dc.titleGPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems
dc.typejournal article
dc.rights.licenseAtribución 4.0 Internacional*
dc.identifier.pubmedID29764362
dc.format.volume19
dc.identifier.doi10.1186/s12859-018-2169-3
dc.contributor.funderMinisterio de Economía y Competitividad (España) 
dc.contributor.funderMinisterio de Economía, Industria y Competitividad (España) 
dc.contributor.funderMinisterio de Sanidad y Consumo (España) 
dc.contributor.funderUnión Europea. Comisión Europea 
dc.contributor.funderMinisterio de Educación, Cultura y Deporte (España) 
dc.description.peerreviewed
dc.relation.publisherversionhttps://doi.org/10.1186/s12859-018-2169-3
dc.identifier.journalBMC Bioinformatics
dc.repisalud.orgCNICCNIC::Unidades técnicas::Imagen Avanzada
dc.repisalud.institucionCNIC
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/644235es_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/TEC2013-47270-Res_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/RTC-2014-3028-1es_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/TIN2016-79637-Pes_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/DPI2016-79075-Res_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/CB07/09/0031es_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/ES/FPU14/03875es_ES
dc.rights.accessRightsopen accesses_ES


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Este Item está sujeto a una licencia Creative Commons: Atribución 4.0 Internacional