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Inhibition of the proline metabolism rate-limiting enzyme P5CS allows proliferation of glutamine-restricted cancer cells.

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Abstract

Glutamine is a critical metabolite for rapidly proliferating cells as it is used for the synthesis of key metabolites necessary for cell growth and proliferation. Glutamine metabolism has been proposed as a therapeutic target in cancer and several chemical inhibitors are in development or in clinical trials. How cells subsist when glutamine is limiting is poorly understood. Here, using an unbiased screen, we identify ALDH18A1, which encodes P5CS, the rate-limiting enzyme in the proline biosynthetic pathway, as a gene that cells can downregulate in response to glutamine starvation. Notably, P5CS downregulation promotes de novo glutamine synthesis, highlighting a previously unrecognized metabolic plasticity of cancer cells. The glutamate conserved from reducing proline synthesis allows cells to produce the key metabolites necessary for cell survival and proliferation under glutamine-restricted conditions. Our findings reveal an adaptive pathway that cancer cells acquire under nutrient stress, identifying proline biosynthesis as a previously unrecognized major consumer of glutamate, a pathway that could be exploited for developing effective metabolism-driven anticancer therapies.

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We thank all members of the Mostoslavsky laboratory for helpful discussions and critical reading of the paper. We thank R. DeBerardinis (University of Texas Southwestern Medical Center) for providing the MycER MEF cell line used in the screen and staff at the Metabolite Profiling Core (Whitehead Institute) for their helpful discussions and technical expertise. S.J.L. is the recipient of a National Institutes of health (NIH) F31 Ruth L. Kirschstein Predoctoral fellowship (F31CA210310). T.B. is a recipient of an EMBO Postdoctoral Fellowship, ALTF 359-2022 . R. Mostoslavsky is the Laurel Schwartz Endowed Chair in Oncology. This work is partially supported by NIH grants R33ES025638 and R01GM128448 and a Massachusetts Life Sciences Center Bits to Bytes award to R. Mostoslavsky, NIH grants R01CA117907, R01GM120109 and P30CA046934, NSF grant MCB-1817582 and grants from the Wings of Hope and Golfers Against Cancer foundations to J.M.E. B.R.R. is funded by the Nile Albright Research Foundation and Vincent Memorial Hospital Foundation.

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Nat Metab . 2023 Dec;5(12):2131-2147

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