Publication:
Edge Artificial Intelligence (AI) for real-time automatic quantification of filariasis in mobile microscopy

dc.contributor.authorLin, Lin
dc.contributor.authorDacal, Elena
dc.contributor.authorDíez, Nuria
dc.contributor.authorCarmona, Claudia
dc.contributor.authorMartin-Ramirez, Alexandra
dc.contributor.authorBarón Argos, Lourdes
dc.contributor.authorBermejo-Peláez, David
dc.contributor.authorCaballero, Carla
dc.contributor.authorCuadrado, Daniel
dc.contributor.authorDarias-Plasencia, Oscar
dc.contributor.authorGarcía-Villena, Jaime
dc.contributor.authorBakardjiev, Alexander
dc.contributor.authorPostigo, Maria
dc.contributor.authorRecalde-Jaramillo, Ethan
dc.contributor.authorFlores-Chavez, Maria
dc.contributor.authorSantos, Andrés
dc.contributor.authorLedesma-Carbayo, María Jesús
dc.contributor.authorRubio Muñoz, Jose Miguel
dc.contributor.authorLuengo-Oroz, Miguel
dc.contributor.funderUnión Europea. Comisión Europea. H2020es_ES
dc.contributor.funderBill & Melinda Gates Foundationes_ES
dc.contributor.funderComunidad de Madrid (España)es_ES
dc.contributor.funderUniversidad Politécnica de Madrid (España)es_ES
dc.contributor.funderMinisterio de Ciencia, Innovación y Universidades (España)es_ES
dc.contributor.funderUnión Europea. Comisión Europea. NextGenerationEUes_ES
dc.contributor.funderAgencia Estatal de Investigación (España)es_ES
dc.date.accessioned2024-06-19T13:26:26Z
dc.date.available2024-06-19T13:26:26Z
dc.date.issued2024-04-17
dc.description.abstractFilariasis, a neglected tropical disease caused by roundworms, is a significant public health concern in many tropical countries. Microscopic examination of blood samples can detect and differentiate parasite species, but it is time consuming and requires expert microscopists, a resource that is not always available. In this context, artificial intelligence (AI) can assist in the diagnosis of this disease by automatically detecting and differentiating microfilariae. In line with the target product profile for lymphatic filariasis as defined by the World Health Organization, we developed an edge AI system running on a smartphone whose camera is aligned with the ocular of an optical microscope that detects and differentiates filarias species in real time without the internet connection. Our object detection algorithm that uses the Single-Shot Detection (SSD) MobileNet V2 detection model was developed with 115 cases, 85 cases with 1903 fields of view and 3342 labels for model training, and 30 cases with 484 fields of view and 873 labels for model validation before clinical validation, is able to detect microfilariae at 10x magnification and distinguishes four species of them at 40x magnification: Loa loa, Mansonella perstans, Wuchereria bancrofti, and Brugia malayi. We validated our augmented microscopy system in the clinical environment by replicating the diagnostic workflow encompassed examinations at 10x and 40x with the assistance of the AI models analyzing 18 samples with the AI running on a middle range smartphone. It achieved an overall precision of 94.14%, recall of 91.90% and F1 score of 93.01% for the screening algorithm and 95.46%, 97.81% and 96.62% for the species differentiation algorithm respectively. This innovative solution has the potential to support filariasis diagnosis and monitoring, particularly in resource-limited settings where access to expert technicians and laboratory equipment is scarce.es_ES
dc.description.peerreviewedes_ES
dc.description.sponsorshipThis work has been partially funded by the European Union’s H2020 Innovation In SMEs research and innovation programme (grant agreement No 881062) and the Bill and Melinda Gates Foundation (grant number Edge-Spot project INV-051355). This work was supported by the Comunidad de Madrid Industrial Predoctoral grant (IND2019/TIC-17167 to LL and Universidad Politécnica de Madrid) and by the Spanish Ministry of Science, Innovation and Universities under grants PID2022-141493OB-I00 and PDC2022-133865-I00 (AEI/10.13039/501100011033/(MCIN/AEI/ERDF, UE) - NextGenerationEU. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.es_ES
dc.format.number4es_ES
dc.format.pagee0012117es_ES
dc.format.volume18es_ES
dc.identifier.citationPLoS Negl Trop Dis. 2024 Apr 17;18(4):e0012117.es_ES
dc.identifier.doi10.1371/journal.pntd.0012117es_ES
dc.identifier.e-issn1935-2735es_ES
dc.identifier.journalPLoS neglected tropical diseaseses_ES
dc.identifier.pubmedID38630833es_ES
dc.identifier.urihttp://hdl.handle.net/20.500.12105/19801
dc.language.isoenges_ES
dc.publisherPublic Library of Science (PLOS)es_ES
dc.relation.projectFECYTinfo:eu-repo/grantAgreement/ES/PID2022-141493OB-I00es_ES
dc.relation.projectFECYTinfo:eu-repo/grantAgreement/ES/PDC2022-133865-I00es_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/881062es_ES
dc.relation.publisherversionhttps://doi.org/10.1371/journal.pntd.0012117es_ES
dc.repisalud.centroISCIII::Centro Nacional de Microbiologíaes_ES
dc.repisalud.institucionISCIIIes_ES
dc.rights.accessRightsopen accesses_ES
dc.rights.licenseAtribución 4.0 Internacional*
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.subject.meshArtificial Intelligencees_ES
dc.subject.meshMicroscopyes_ES
dc.subject.meshHumanses_ES
dc.subject.meshAnimalses_ES
dc.subject.meshFilariasises_ES
dc.subject.meshMicrofilariaees_ES
dc.subject.meshAlgorithmses_ES
dc.subject.meshSmartphonees_ES
dc.subject.meshElephantiasis, Filariales_ES
dc.titleEdge Artificial Intelligence (AI) for real-time automatic quantification of filariasis in mobile microscopyes_ES
dc.typeresearch articlees_ES
dc.type.hasVersionVoRes_ES
dspace.entity.typePublication
relation.isAuthorOfPublication36bbe58f-e5da-4716-8f2a-50b55f83b874
relation.isAuthorOfPublication0a133c1f-9c3f-43db-8317-cc4e6bafa000
relation.isAuthorOfPublication3693352b-86b3-45cf-97cd-2b385e1a0fd4
relation.isAuthorOfPublicationf7f5ae06-0e03-4f0c-9ec3-b1afd845f525
relation.isAuthorOfPublication51902794-d996-4473-b0d7-3cd2a2c34429
relation.isAuthorOfPublication.latestForDiscovery36bbe58f-e5da-4716-8f2a-50b55f83b874

Files

Original bundle

Now showing 1 - 1 of 1
Loading...
Thumbnail Image
Name:
EdgeArtificialIntelligenceRealTime_2024.pdf
Size:
1.96 MB
Format:
Adobe Portable Document Format
Description: