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Intracellular autofluorescence: a biomarker for epithelial cancer stem cells.

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Abstract

Cancer stem cells (CSCs) are thought to drive tumor growth, metastasis and chemoresistance. Although surface markers such as CD133 and CD44 have been successfully used to isolate CSCs, their expression is not exclusively linked to the CSC phenotype and is prone to environmental alteration. We identified cells with an autofluorescent subcellular compartment that exclusively showed CSC features across different human tumor types. Primary tumor-derived autofluorescent cells did not overlap with side-population (SP) cells, were enriched in sphere culture and during chemotherapy, strongly expressed pluripotency-associated genes, were highly metastatic and showed long-term in vivo tumorigenicity, even at the single-cell level. Autofluorescence was due to riboflavin accumulation in membrane-bounded cytoplasmic structures bearing ATP-dependent ABCG2 transporters. In summary, we identified and characterized an intrinsic autofluorescent phenotype in CSCs of diverse epithelial cancers and used this marker to isolate and characterize these cells.

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We thank A. Gonzalez-Neira and L. Moreno from the CNIO Human Genotyping-CEGEN Unit for performing the TaqMan OpenArray SNAP analysis, and S.M. Trabulo and M. Tatari for their excellent in vivo technical assistance. The research was supported by the ERC Advanced Investigator Grant (Pa-CSC 233460), the European Community's Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 256974 (EPC-TM-NET) and no. 602783 (CAM-PaC), the Associazione Italiana Ricerca Cancro (AIRC grant no. 12182 to A.S.), the Italian Cancer Genome Project Ministry of University and Research (FIRB RBAP10AHJB to A.S.), the FIMP-Italian Ministry of Health (CUP_333G13000210001), the Subdireccion General de Evaluacion y Fomento de la Investigacion, Fondo de Investigacion Sanitaria (PS09/02129 & PI12/02643) and the Programa Nacional de Internacionalizacion de la I+D, Subprogramma: FCCI 2009 (PLE2009-0105; both Ministerio de Economia y Competitividad (es), Spain). M.C. was supported by the La Caixa Predoctoral Fellowship Program.

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Nat Methods . 2014 Nov;11(11):1161-9

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