Publication: Human cerebral organoids: cellular composition and subcellular morphological features
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Mateos-Martínez, Patricia ISCIII 

Coronel Lopez, Raquel ISCIII 



Sachse, Martin ISCIII 





González-Sastre, Rosa ISCIII 

Maeso Cuesta, Laura ISCIII 

Rodríguez, María Josefa ISCIII 

López-Alonso, Victoria ISCIII 





Liste-Noya, Isabel ISCIII 



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Abstract
Introduction: Human cerebral organoids (hCOs) derived from pluripotent stem cells are very promising for the study of neurodevelopment and the investigation of the healthy or diseased brain. To help establish hCOs as a powerful research model, it is essential to perform the morphological characterization of their cellular components in depth. Methods: In this study, we analyzed the cell types consisting of hCOs after culturing for 45 days using immunofluorescence and reverse transcriptase qualitative polymerase chain reaction (RT-qPCR) assays. We also analyzed their subcellular morphological characteristics by transmission electron microscopy (TEM). Results: Our results show the development of proliferative zones to be remarkably similar to those found in human brain development with cells having a polarized structure surrounding a central cavity with tight junctions and cilia. In addition, we describe the presence of immature and mature migrating neurons, astrocytes, oligodendrocyte precursor cells, and microglia-like cells. Discussion: The ultrastructural characterization presented in this study provides valuable information on the structural development and morphology of the hCO, and this information is of general interest for future research on the mechanisms that alter the cell structure or function of hCOs.
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Supplementary figure S1: (A) Uniform manifold approximation and projection (UMAP) plot from unsupervised clustering of scRNAseq of the hCOs after culturing for 45 days and 60 days. Colors represent the cell clusters annotated as excitatory neurons (EN), interneurons (IN), neurons (N), intermediate precursor cells (IPC), oligodendrocyte precursors cells (OPC), astrocytes (AS), outer radial glia and astroglia (oRG + Astroglia), apical radial glia (aRG), and proliferative radial glia (pro-RG). (B) Bar plot displaying the proportion of each cluster of cells for hCOs after culturing for 45 days and 60 days. A dot plot indicating the expression of cell type-specific marker genes. The dot size represents the percentage of cells expressing the gene and the color gradient from low (blue) to high (red) indicates the average relative expression. (C) Violin plots showing the expression for VIM, SOX2, DCX, and MAP2 for hCOs after culturing for 45 days and 60 days. (D) The dot plot showing the expression for the cellular cluster of marker genes of CR: Cajal-Retzius; CP: choroid plexus; FD: forebrain dorsal; FV: forebrain ventral; HY: hippocampus; and MB/HB: midbrain and hindbrain. (E) Representation of enriched GO terms for upregulated and downregulated DEGs of the hCOs after culturing for 60 days versus after culturing for 45 days in the excitatory neurons cluster (Done from ReviGO).
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Front Cell Neurosci. 2024 Jun 12:18:1406839.





