Please use this identifier to cite or link to this item:http://hdl.handle.net/20.500.12105/7847
SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments
Bioinformatics. 2019; 35(9):1594-6
SUMMARY: Mass spectrometry-based proteomics has had a formidable development in recent years, increasing the amount of data handled and the complexity of the statistical resources needed. Here we present SanXoT, an open-source, standalone software package for the statistical analysis of high-throughput, quantitative proteomics experiments. SanXoT is based on our previously developed weighted spectrum, peptide and protein statistical model and has been specifically designed to be modular, scalable and user-configurable. SanXoT allows limitless workflows that adapt to most experimental setups, including quantitative protein analysis in multiple experiments, systems biology, quantification of post-translational modifications and comparison and merging of experimental data from technical or biological replicates. AVAILABILITY AND IMPLEMENTATION: Download links for the SanXoT Software Package, source code and documentation are available at https://wikis.cnic.es/proteomica/index.php/SSP. CONTACT: firstname.lastname@example.org or email@example.com. SUPPLEMENTARY INFORMATION: Supplementary information is available at Bioinformatics online.
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