Por favor, use este identificador para citar o enlazar este Item:http://hdl.handle.net/20.500.12105/7672
Título
The multi-reference contrast method: facilitating set enrichment analysis
Autor(es)
Fecha de publicación
2012-02
Cita
Comput Biol Med. 2012; 42(2):188-94
Idioma
Inglés
Tipo de documento
journal article
Resumen
Set enrichment analysis (SEA) is used to identify enriched biological categories/terms within high-throughput differential expression experiments. This is done by evaluating the proportion of differentially expressed genes against a background reference (BR). However, the choice of the "appropriate" BR is a perplexing problem and results will depend on it. Here, a visualization procedure that integrates results from several BRs and a stability analysis of enriched terms is presented as a tool to aid SEA. The multi-reference contrast method (MRCM) combines results from multiple BRs in a unique picture. The application of the proposed method was illustrated in one proteomic and three microarray experiments. The MRCM facilitates the exploration task involved in ontology analysis on proteomic/genomic experiments, where consensus terms were found to validate main experimental hypothesis. The use of more than one reference may provide new biological insights. The tool automatically highlights non-consensus terms assisting SEA.
MESH
Animals | Cluster Analysis | Data Mining | Electrophoresis, Gel, Two-Dimensional | Gene Expression Profiling | Genomics | Humans | Mice | Models, Theoretical | Oligonucleotide Array Sequence Analysis | Proteomics | Databases, Genetic | Terminology as Topic
Versión en línea
DOI
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